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Highlights of my academic career

Nimesh R. Chahare

  • Biomedical Engineering, Columbia University, USA

Research Interests

  • Bioengineering
    • Mechanobiology, Tissue engineering, and Lab-on-the-chip
  • Mechanics
    • Continuum mechanics, Material testing, and Biophysics

Education

  • 2023
    Ph.D. in Applied Mathematics
    Universitat Politècnica de Catalunya, Barcelona, Spain
    • Mechanics of epithelial layers subjected to controlled pressure and tension
    • Supervised by
      • Prof. Xavier Trepat
      • Prof. Marino Arroyo
  • 2016
    M.E. in Mechanical Engineering
    Indian Institute of Science, Bengaluru, India
    • Design and fabrication of miniature shear device for cell mechanics
    • Supervised by
      • Prof. Namrata Gundiah
  • 2014
    B.Tech. in Mechanical Engineering
    Visvesvaraya National Institute of Technology, Nagpur, India
    • Design and Fabrication of a Hirda (Terminalia chebula) Cracking Machine
    • Supervised by
      • Prof. Pramod Padole

Patents

  • 2018
    • Pullarkat, P., Vishwakarma, R., Gundiah, N., and Chahare, N. R., A microscope mountable fluid shear device. Indian patent, IN201641029893A, pg 275/677 Published 2018-03-09.

Articles in Peer-Reviewed Journals

  • 2022
    • Andreu, I. + , Granero-Moya, I. + , Chahare, N. R., Clein, K., Jordàn, M. M., Beedle, A. E., … & Roca-Cusachs, P. (2022). Mechanical force application to the nucleus regulates nucleocytoplasmic transport. Nature Cell Biology
  • 2021
    • Andreu, I. + , Falcones, B. + , Hurst, S., Chahare, N., Quiroga, X., Le Roux, A. L., … & Roca-Cusachs, P. (2021). The force loading rate drives cell mechanosensing through both reinforcement and cytoskeletal softening. Nature communications, 12(1), 1-12.
    • Chatterjee, A., Chahare, N. R., Kondaiah, P., & Gundiah, N. (2021). Role of Fiber Orientations in the Mechanics of Bioinspired Fiber-Reinforced Elastomers. Soft Robotics, 8(6), 640-650.
  • 2020
    • Kundanati, L., Chahare, N. R., Jaddivada, S., Karkisaval, A. G., Sridhar, R., Pugno, N. M., & Gundiah, N. (2020). Cutting mechanics of wood by beetle larval mandibles. Journal of the Mechanical Behavior of Biomedical Materials, 112, 104027.

Research Experience

  • 2017 - 2023
    Ph.D. student
    Institute for Bioengineering of Catalonia, and UPC
    • Mechanics of epithelial layers subjected to controlled pressure and tension
      • Designed a microfluidic chip to control epithelial shapes and pressure.
      • Performed rheological study with inflated epithelial monolayers to understand actomyosin cortex remodelling.
      • Discovered a new method to generate epithelial folds via mechanical phenomena of buckling.
    • Computational tool for analysing nuclear to cytoplasmic transport
      • Working in collaboration with Prof. Pere Roca-Cusachs and Ion Andreu, developed a MATLAB script to calculate import and export rate of mechanosensitive protien.
      • Developed a fitting algorithm to elucidate protein mobility with Fluorescence recovery after photobleaching (FRAP).
      • Utilized an elegant system of differential equations to analyse data from Fluorescence Loss in Photobleaching (FLIP).
    • Analysis of force loading rates associated with cell mechanosensing
      • Working in collaboration with Prof. Pere Roca-Cusachs and Victor Gonzalez-Tarrago, developed a MATLAB script for analysing atomic force microscopy data from JPK software raw data.
      • Analysed timeseries data from AFM experiments to determine detachment force.
      • Analysed optical tweezer experiments by fiting curves piecewise linearly to calculate stiffness of the cells.
  • 2016 - 2017
    Project Associate
    Biomechanics Lab, Indian Institute of Science
    • Developing constitutive model of Fiber Reinforced Elastomers (FRE)
      • Computed stresses and strains from uniaxial and biaxial stretching experiments of Polydimethylsiloxane Fibre Reinforced Elastomer.
      • Modeled experimental results using hyperelastic constitutive equation.
      • Performed constrained optimization using custom built MATLAB program for fitting the experimental results.
  • 2014 - 2016
    Masters student
    Mechanical Engineering, Indian Institute of Science
    • Design and fabrication of miniature shear device for cell mechanics
      • Designed a cost effective system capable of applying uniform shear on culture cells along with real time visualization using fluorescence microscopy.
      • Implemented trajectory generation filter based control system in the shear device electronics using MATLAB and Arduino programming.
      • Calibrated the device using fluorescence microscopy and traction force microscopy to test for uniform shear flow conditions.
    • Finite element analysis of coffee white stem borer (CWSB) mandible
      • Created geometry of insect mandible from tomography data using image processing and CAD modeling.
      • Stress and displacement distribution on mandible during wood boring were computed using commercial FEA package, ABAQUS.
      • Stresses on the mandible were used to examine the morphological adaptations that provide distinct mechanical advantages to the insect for cutting purposes.

Conferences

  • 2023
    • Chahare, N. R., Ouzeri, A., Golde, T., Wilson, T., Roca-cusachs, P., Arroyo, M., and Trepat, X. “ Harnessing active viscoelasticity for synthetic epithelial morphogenesis.” German Physics Society, Dresden, Germany. March 26-31, 2023
  • 2022
    • Chahare, N. R., Ouzeri, A., Golde, T., Wilson, T. Arroyo, M., and Trepat, X. “Shaping epithelia through buckling in pressure-controlled tissue.” World congress of biomechanics, Taipei, Taiwan. July 10-14, 2022
    • Chahare, N. R., Ouzeri, A., Golde, T., Wilson, T. Arroyo, M., and Trepat, X. “Synthetic epithelial morphogenesis through controlled stretching and buckling.” EMBL-IBEC Conference, Engineering multicellular systems, Barcelona, Spain. June 08-10, 2022
    • Chahare, N. R., Ouzeri, A., Golde, T., Wilson, T. Arroyo, M., and Trepat, X. “Synthetic epithelial morphogenesis through controlled stretching and buckling.” EMBO-EMBL Symposium, Mechanobiology in development and disease, Heidelberg, Germany. May 15–18, 2022
  • 2017
    • Chatterjee, A., Chahare, N. R., Kulkarni, A., Kondaiah, P., and Gundiah, N. “Design of adynamic cell stretcher to quantify responses of fibroblasts to cyclic stretching and TGF-β.”5th International Conference on Computational and Mathematical Biomedical Engineering,Pittsburgh, Pennsylvania, USA. April 10–12, 2017
  • 2016
    • Satone, V., Chahare, N. R., and Padole, P. “Design of pedal operated behda crackingmachine using flywheel motor.” Association for Machines and Mechanisms’ IndustrialProblems on Machines and Mechanisms (IPRoMM), Nagpur, India. Dec 22–23, 2016
    • Abhijith, K. G., Chahare, N. R., Kundanati, L., and Gundiah, N. “Mechanics of the Cuticleof Wood Boring Insects.” Structural Integrity Conference and Exhibition (SICE), Bengaluru,India. July 4–6, 2016

Teaching experience

  • 2021
    • Mentored Gavin McQuarrie, student from University of Glasgow, jointly with Anabel-lise Le Roux to calibrate and develop stretch system.
    • Undertook Alexandre Garcia-Duran as summer student in University of Barcelona Intership project of characterizing stiffness of PDMS and developing a Microfluidic device for stretching cells/tissues.
  • 2017
    • Trained two high school students in a project related to 3D epithelia at Institute for Bioengineering of Catalonia with Treball de Recerca program.

Technical skills

  • Cell Biology and Microscopy
    • Spinning disk confocal microscopy, Airy Scan Confocal microscopy, light and fluorescence microscopy. Light sheet microscopy.
    • Photobleaching techniques in Fluorescence recovery after Photobleaching (FRAP) and FluorescenceLoss in Photobleaching (FLIP).
    • Cell culture, Protein micropatterning techniques, and Elastomer preparation, Hydrogel preparation.
  • Programming
    • MATLAB, R, Python, Maple, Wolfram Mathematica, HTML, LATEX, Markdown and Arduino IDE.
  • Design and Analysis
    • SolidWorks, Inkscape, Adobe Illustrator, SolidEdge, Cinema4D and Keyshot.
    • ImageJ, AMIRA, ABAQUS, Hypermesh, and COMSOL.
  • Mechanical and Material Testing
    • Dynamic mechanical spectroscopy (DMA, TA Instruments), microindentation (CSM Micro-HardnessTester), 3D printing, and bioreactors (planar biaxial stretcher and shear device).

Honors and Awards

  • 2022
    • Won the best poster prize at 15th IBEC SYMPOSIUM on Bioengineering for Active Ageing, Barcelona, Spain, 2022.
  • 2016
    • International travel grant for attending winter school on Quantitative Systems Biology at International Centre for Theoretical Sciences (ICTS), Bengaluru, India 2019.
  • 2016
    • Received second prize for Best paper presentation in Association for Machines and Mechanisms’ Industrial Problems on Machines and Mechanisms (IPRoMM), Nagpur, India
  • 2014
    • Awarded scholarship by Ministry of Human resource and development, India for M.E. 2014-16.
    • All India Rank 362 (99.8 percentile) out of 185,578 in Graduate Aptitude Test in Engineering
  • 2013
    • Bagged 22nd position in national level presentation competition for future transportation solution, TATA MOTORS’ MIND ROVER.

Activities

  • Responsibilities
    • Managed data servers (synology and magnetic tape drive system) in the Prof. Trepat’s lab.
    • Member of PhD committee at IBEC.

Languages

  • Native
    • Marathi, Hindi, and English
  • Basic
    • Catalan and Spanish