cv
Highlights of my academic career
Nimesh R. Chahare
- Biomedical Engineering, Columbia University, USA
Research Interests
-
Bioengineering
- Mechanobiology, Tissue engineering, and Lab-on-the-chip
-
Mechanics
- Continuum mechanics, Material testing, and Biophysics
Education
- 2023
Ph.D. in Applied Mathematics
Universitat Politècnica de Catalunya, Barcelona, Spain
- Mechanics of epithelial layers subjected to controlled pressure and tension
- Supervised by
- Prof. Xavier Trepat
- Prof. Marino Arroyo
- 2016
M.E. in Mechanical Engineering
Indian Institute of Science, Bengaluru, India
- Design and fabrication of miniature shear device for cell mechanics
- Supervised by
- Prof. Namrata Gundiah
- 2014
B.Tech. in Mechanical Engineering
Visvesvaraya National Institute of Technology, Nagpur, India
- Design and Fabrication of a Hirda (Terminalia chebula) Cracking Machine
- Supervised by
- Prof. Pramod Padole
Patents
- 2018
- Pullarkat, P., Vishwakarma, R., Gundiah, N., and Chahare, N. R., A microscope mountable fluid shear device. Indian patent, IN201641029893A, pg 275/677 Published 2018-03-09.
Articles in Peer-Reviewed Journals
- 2022
- Andreu, I. + , Granero-Moya, I. + , Chahare, N. R., Clein, K., Jordàn, M. M., Beedle, A. E., … & Roca-Cusachs, P. (2022). Mechanical force application to the nucleus regulates nucleocytoplasmic transport. Nature Cell Biology
- 2021
- Andreu, I. + , Falcones, B. + , Hurst, S., Chahare, N., Quiroga, X., Le Roux, A. L., … & Roca-Cusachs, P. (2021). The force loading rate drives cell mechanosensing through both reinforcement and cytoskeletal softening. Nature communications, 12(1), 1-12.
- Chatterjee, A., Chahare, N. R., Kondaiah, P., & Gundiah, N. (2021). Role of Fiber Orientations in the Mechanics of Bioinspired Fiber-Reinforced Elastomers. Soft Robotics, 8(6), 640-650.
- 2020
- Kundanati, L., Chahare, N. R., Jaddivada, S., Karkisaval, A. G., Sridhar, R., Pugno, N. M., & Gundiah, N. (2020). Cutting mechanics of wood by beetle larval mandibles. Journal of the Mechanical Behavior of Biomedical Materials, 112, 104027.
Research Experience
- 2017 - 2023
Ph.D. student
Institute for Bioengineering of Catalonia, and UPC
- Mechanics of epithelial layers subjected to controlled pressure and tension
- Designed a microfluidic chip to control epithelial shapes and pressure.
- Performed rheological study with inflated epithelial monolayers to understand actomyosin cortex remodelling.
- Discovered a new method to generate epithelial folds via mechanical phenomena of buckling.
- Computational tool for analysing nuclear to cytoplasmic transport
- Working in collaboration with Prof. Pere Roca-Cusachs and Ion Andreu, developed a MATLAB script to calculate import and export rate of mechanosensitive protien.
- Developed a fitting algorithm to elucidate protein mobility with Fluorescence recovery after photobleaching (FRAP).
- Utilized an elegant system of differential equations to analyse data from Fluorescence Loss in Photobleaching (FLIP).
- Analysis of force loading rates associated with cell mechanosensing
- Working in collaboration with Prof. Pere Roca-Cusachs and Victor Gonzalez-Tarrago, developed a MATLAB script for analysing atomic force microscopy data from JPK software raw data.
- Analysed timeseries data from AFM experiments to determine detachment force.
- Analysed optical tweezer experiments by fiting curves piecewise linearly to calculate stiffness of the cells.
- Mechanics of epithelial layers subjected to controlled pressure and tension
- 2016 - 2017
Project Associate
Biomechanics Lab, Indian Institute of Science
- Developing constitutive model of Fiber Reinforced Elastomers (FRE)
- Computed stresses and strains from uniaxial and biaxial stretching experiments of Polydimethylsiloxane Fibre Reinforced Elastomer.
- Modeled experimental results using hyperelastic constitutive equation.
- Performed constrained optimization using custom built MATLAB program for fitting the experimental results.
- Developing constitutive model of Fiber Reinforced Elastomers (FRE)
- 2014 - 2016
Masters student
Mechanical Engineering, Indian Institute of Science
- Design and fabrication of miniature shear device for cell mechanics
- Designed a cost effective system capable of applying uniform shear on culture cells along with real time visualization using fluorescence microscopy.
- Implemented trajectory generation filter based control system in the shear device electronics using MATLAB and Arduino programming.
- Calibrated the device using fluorescence microscopy and traction force microscopy to test for uniform shear flow conditions.
- Finite element analysis of coffee white stem borer (CWSB) mandible
- Created geometry of insect mandible from tomography data using image processing and CAD modeling.
- Stress and displacement distribution on mandible during wood boring were computed using commercial FEA package, ABAQUS.
- Stresses on the mandible were used to examine the morphological adaptations that provide distinct mechanical advantages to the insect for cutting purposes.
- Design and fabrication of miniature shear device for cell mechanics
Conferences
- 2023
- Chahare, N. R., Ouzeri, A., Golde, T., Wilson, T., Roca-cusachs, P., Arroyo, M., and Trepat, X. “ Harnessing active viscoelasticity for synthetic epithelial morphogenesis.” German Physics Society, Dresden, Germany. March 26-31, 2023
- 2022
- Chahare, N. R., Ouzeri, A., Golde, T., Wilson, T. Arroyo, M., and Trepat, X. “Shaping epithelia through buckling in pressure-controlled tissue.” World congress of biomechanics, Taipei, Taiwan. July 10-14, 2022
- Chahare, N. R., Ouzeri, A., Golde, T., Wilson, T. Arroyo, M., and Trepat, X. “Synthetic epithelial morphogenesis through controlled stretching and buckling.” EMBL-IBEC Conference, Engineering multicellular systems, Barcelona, Spain. June 08-10, 2022
- Chahare, N. R., Ouzeri, A., Golde, T., Wilson, T. Arroyo, M., and Trepat, X. “Synthetic epithelial morphogenesis through controlled stretching and buckling.” EMBO-EMBL Symposium, Mechanobiology in development and disease, Heidelberg, Germany. May 15–18, 2022
- 2017
- Chatterjee, A., Chahare, N. R., Kulkarni, A., Kondaiah, P., and Gundiah, N. “Design of adynamic cell stretcher to quantify responses of fibroblasts to cyclic stretching and TGF-β.”5th International Conference on Computational and Mathematical Biomedical Engineering,Pittsburgh, Pennsylvania, USA. April 10–12, 2017
- 2016
- Satone, V., Chahare, N. R., and Padole, P. “Design of pedal operated behda crackingmachine using flywheel motor.” Association for Machines and Mechanisms’ IndustrialProblems on Machines and Mechanisms (IPRoMM), Nagpur, India. Dec 22–23, 2016
- Abhijith, K. G., Chahare, N. R., Kundanati, L., and Gundiah, N. “Mechanics of the Cuticleof Wood Boring Insects.” Structural Integrity Conference and Exhibition (SICE), Bengaluru,India. July 4–6, 2016
Teaching experience
- 2021
- Mentored Gavin McQuarrie, student from University of Glasgow, jointly with Anabel-lise Le Roux to calibrate and develop stretch system.
- Undertook Alexandre Garcia-Duran as summer student in University of Barcelona Intership project of characterizing stiffness of PDMS and developing a Microfluidic device for stretching cells/tissues.
- 2017
- Trained two high school students in a project related to 3D epithelia at Institute for Bioengineering of Catalonia with Treball de Recerca program.
Technical skills
-
Cell Biology and Microscopy
- Spinning disk confocal microscopy, Airy Scan Confocal microscopy, light and fluorescence microscopy. Light sheet microscopy.
- Photobleaching techniques in Fluorescence recovery after Photobleaching (FRAP) and FluorescenceLoss in Photobleaching (FLIP).
- Cell culture, Protein micropatterning techniques, and Elastomer preparation, Hydrogel preparation.
-
Programming
- MATLAB, R, Python, Maple, Wolfram Mathematica, HTML, LATEX, Markdown and Arduino IDE.
-
Design and Analysis
- SolidWorks, Inkscape, Adobe Illustrator, SolidEdge, Cinema4D and Keyshot.
- ImageJ, AMIRA, ABAQUS, Hypermesh, and COMSOL.
-
Mechanical and Material Testing
- Dynamic mechanical spectroscopy (DMA, TA Instruments), microindentation (CSM Micro-HardnessTester), 3D printing, and bioreactors (planar biaxial stretcher and shear device).
Honors and Awards
- 2022
- Won the best poster prize at 15th IBEC SYMPOSIUM on Bioengineering for Active Ageing, Barcelona, Spain, 2022.
- 2016
- International travel grant for attending winter school on Quantitative Systems Biology at International Centre for Theoretical Sciences (ICTS), Bengaluru, India 2019.
- 2016
- Received second prize for Best paper presentation in Association for Machines and Mechanisms’ Industrial Problems on Machines and Mechanisms (IPRoMM), Nagpur, India
- 2014
- Awarded scholarship by Ministry of Human resource and development, India for M.E. 2014-16.
- All India Rank 362 (99.8 percentile) out of 185,578 in Graduate Aptitude Test in Engineering
- 2013
- Bagged 22nd position in national level presentation competition for future transportation solution, TATA MOTORS’ MIND ROVER.
Activities
-
Responsibilities
- Managed data servers (synology and magnetic tape drive system) in the Prof. Trepat’s lab.
- Member of PhD committee at IBEC.
Languages
-
Native
- Marathi, Hindi, and English
-
Basic
- Catalan and Spanish